Review
Significance and properties of the complex formation of phosphate and polyphosphate groups in particles present in living cells

https://doi.org/10.1016/j.ccr.2021.213810Get rights and content
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Highlights

  • Phosphate groups in noncovalent interactions.

  • Complex formation of phosphorylated ligands.

  • Influence of pH on the effectiveness of binding the phosphate group.

  • The effect of polyamine excess on the mode of coordination of phosphates.

Abstract

Phosphorus, occurring mainly in the form of phosphate, is an essential element for the proper functioning of living systems. Phosphate and polyphosphate groups occur as inorganic phosphate (free phosphate anion in solution) and are present in biomolecules such as phosphorylated amino acids, nucleotides, and phytic acid. In solution, phosphates can exist in four different forms depending on pH, and they are involved in non-covalent interactions with positively charged species. This review summarizes the participation of phosphates of nucleotides, phosphorylated amino acids, and phytic acid in weak interactions with biogenic amines and in complexes with biometal ions not only in solution but also in solid state. The study of these processes can enable to understand many of the most important aspects of a cell’s life, thus explaining why, for example, abnormal phosphorylation leads to the development of diseases, and highlighting the role of phosphates in chemical interactions. In addition, the formation of one-, two-, and three-dimensional polynuclear metal-phosphonate assemblies by phosph(on)ate ligands has been described.

Keywords

Phosphates
Non-covalent bond
Coordination mode
Complexes in solution
Crystal structures

Abbreviations

AA
amino acid
AAP
phosphorylated amino acid
ADP
adenosine-5ʹ-diphosphate
Agm
agmatine
AMP
adenosine-5ʹ-monophosphate
ATP
adenosine-5ʹ-triphosphate
AP
adenosine phosphate
bpy
2,2-bipyridine
CDP
cytidine-5ʹ-diphosphate
CMP
cytidine-5ʹ-monophosphate
CTP
cytidine-5ʹ-triphosphate
DFT
density functional theory
diP
diphosphates (pyrophosphate)
dippH2
2,6-di-iso propylphenyl phosphate
DNA
deoxyribonucleic acid
GDP
guanosine-5ʹ-diphosphate
GMP
guanosine-5ʹ-monophosphate
GTP
guanosine-5ʹ-triphosphate
HIV
human immunodeficiency virus
IMP
inosine-5ʹ-monophosphate
IP6
phytic acid (myo-inositol hexaphosphate)
ITP
inosine-5ʹ-triphosphate
L
ligand
M
metal ion
MOFs
Metal-organic frameworks
monoP
monophosphates (orthophosphate)
PA
polyamine
phen
1,10-phenanthroline
PP
polyphosphates or polymetaphosphates
Put
putrescine
pz, pyrazine RNA
ribonucleic acid
Ser
L-serine
Ser-P
phosphoserine
Spd
spermidine
Spm
spermine
TDP
thymidine-5ʹ-diphosphate tetrametaP, tetrametaphosphates
TMP
thymidine -5ʹ-monophosphate
Thr
L-threonine
Thr-P
phosphothreonine
tpmb
1,2,4,5-tetrakis(phosphorylmethyl) benzene
tppz
2,3,5,6-tetra-(2-pyridyl)pyrazine
triP
triphosphates
TTP
thymidine-5ʹ-triphosphate
UDP
uridine-5ʹ-diphosphate
UMP
uridine-5ʹ-monophosphate
UTP
uridine-5ʹ-triphosphate

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